Determination of the main reservoir hosts of West Nile virus among wild birds in Tana River County, Kenya
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Nyamwaya, D.K. 2016. Determination of the main reservoir hosts of West Nile virus among wild birds in Tana River County, Kenya. MSc thesis. Nairobi, Kenya: University of Nairobi.
Permanent link to cite or share this item: https://hdl.handle.net/10568/78812
External link to download this item: https://hdl.handle.net/11295/97326
Re-emerging infectious diseases can cause serious health and economic effects in a society. West Nile virus fever is a zoonotic arboviral infection maintained in nature within a cycle between mosquito vectors and birds. This virus was first isolated in Uganda with subsequent reports of epidemics globally. In order to establish effective monitoring and surveillance measures, knowledge on the ecological and transmission patterns is necessary. This study aimed at determining the main reservoir hosts of West Nile virus. Blood samples were obtained from 361 randomly sampled wild birds in Tana River County, Kenya, in the months of October and December 2014. The samples were subjected to nucleic acid based screening for West Nile virus using the virus specific primers in real time polymerase chain reaction after total ribonucleic acid extraction. The amplification was carried out against a standard curve generated using serial dilutions of a synthetic positive control. A total of 65 samples exhibited positive amplification with a high cycle threshold value of 30. Visualization of the amplified fragments on agarose gel revealed bands of targeted 445 base pair fragments. Sanger sequences of 5 of the samples indicated genetic relationship to West Nile virus XJ11141, XJ11129, XJ11148 and Ast-986 strains initially isolated from China and Russia. Phylogenetic analysis clustered the isolates with described lineage 1 strains in Genebank. A regression analysis indicated that the sampling location influenced the occurrence of West Nile virus while species, age, weight and sex of the birds did not have any effect. This study provides baseline information on the existing circulation of the virus in this region among wild birds that could spill into the human population and points to the need for implementation of surveillance programs. Therefore, there is need to enhance awareness in the public health department of this region to contain its circulation