Genotyping-by-sequencing (GBS) dataset for 185 accessions of buffel grass (<em>Cenchrus ciliaris</em>)

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2024-02-26

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Negawo, A.T. and Chris, J. (26/2/2024). Genotyping-by-sequencing (GBS) dataset for 185 accessions of buffel grass (Cenchrus ciliaris) [Genotyping-by-sequencing (GBS) dataset].

Abstract/Description

This dataset presents 7,506 SNP markers (genotype calls "0", "1" and "2) and 8,345 silicoDArT markers (presence/absence, calls "0" and "1), each on 185 accessions of Cenchrus ciliaris, aka. buffel grass (csv list attached). In both xlsx files, missing genotype calls are encoded "-".

SNP calls are encoded as follows: 0 = homozygote in the reference allele, 1 = homozygote in the alternative (SNP) allele, 2 = heterozygote.

This GBS information pertains to buffel grass i.e. Cenchrus ciliaris (aka. Pennisetum ciliare), but any mapping information, when present, relates the markers to Setaria italica (foxtail millet) in the "Setaria_italica_v2.0" genome assembly of its Yugu1 strain, with INSDC identifier GCA_000263155.2.

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Related Citation
Negawo, A.T.; Muktar, M.S.; Gutiérrez, R.A.S.; Habte, E.; Muchugi, A.; Jones, C.S. A Genome-Wide Association Study of Biomass Yield and Feed Quality in Buffel Grass (Cenchrus ciliaris L.). Agriculture 2024, 14, 257. https://doi.org/10.3390/agriculture14020257
Related Citation
Negawo, A.T.; Assefa, Y.; Hanson, J.; Abdena, A.; Muktar, M.S.; Habte, E.; Sartie, A.M.; Jones, C.S. Genotyping-By-Sequencing Reveals Population Structure and Genetic Diversity of a Buffelgrass (Cenchrus ciliaris L.) Collection. Diversity 2020, 12, 88. https://doi.org/10.3390/d12030088

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