Genome sequence and analysis of the tuber crop potato

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cg.creator.identifierMarc Ghislain: 0000-0001-6485-1494
cg.howPublishedFormally Published
cg.identifier.doihttps://doi.org/10.1038/nature10158
cg.isijournalISI Journal
cg.issn0028-0836
cg.issue7355
cg.journalNature
cg.reviewStatusPeer Review
cg.volume475
dc.contributor.authorXu, X.
dc.contributor.authorPan, P.
dc.contributor.authorCheng, S.
dc.contributor.authorZhang, B.
dc.contributor.authorMu, D.
dc.contributor.authorNi, P.
dc.contributor.authorZhang, G.
dc.contributor.authorYang, S.
dc.contributor.authorLi, R.
dc.contributor.authorWang, S.
dc.contributor.authorOrjeda, G.
dc.contributor.authorGuzmán, F.
dc.contributor.authorTorres, M.
dc.contributor.authorLozano, R.
dc.contributor.authorPonce, O.
dc.contributor.authorMartínez, D.
dc.contributor.authorCruz, G. de la
dc.contributor.authorChakrabarti, S.K.
dc.contributor.authorPatil, V.U.
dc.contributor.authorSkryabin, K.G.
dc.contributor.authorKuznetsov, B.B.
dc.contributor.authorRavin, N.V.
dc.contributor.authorKolganova, T.V.
dc.contributor.authorBeletsky, A.V.
dc.contributor.authorMardanov, A.V.
dc.contributor.authorGenova, A.D.
dc.contributor.authorBolser, D.M.
dc.contributor.authorMartin, D.M.A.
dc.contributor.authorLi, G.
dc.contributor.authorYang, Y.
dc.contributor.authorKuang, H.
dc.contributor.authorHu, Q.
dc.contributor.authorXiong, X.
dc.contributor.authorBishop, G.J.
dc.contributor.authorSagredo, B.
dc.contributor.authorMejia, N.
dc.contributor.authorZagorski, W.
dc.contributor.authorGromadka, R.
dc.contributor.authorGawor, J.
dc.contributor.authorSzczesny, P.
dc.contributor.authorHuang, S.
dc.contributor.authorZhang, Z.
dc.contributor.authorLiang, C.
dc.contributor.authorHe, J.
dc.contributor.authorLi, Y.
dc.contributor.authorHe, Y.
dc.contributor.authorXu, J.
dc.contributor.authorZhang Yanyan
dc.contributor.authorXie, B.
dc.contributor.authorDu, Y.
dc.contributor.authorQu, D.
dc.contributor.authorBonierbale, Merideth W.
dc.contributor.authorGhislain, M.
dc.contributor.authorHerrera, M.R.
dc.contributor.authorGiuliano, G.
dc.contributor.authorPietrella, M.
dc.contributor.authorPerrotta, G.
dc.contributor.authorFacella, P.
dc.contributor.authorO'Brien, K.
dc.contributor.authorFeingold, S.E.
dc.contributor.authorBarreiro, L.E.
dc.contributor.authorMassa, G.A.
dc.contributor.authorDiambra, L.
dc.contributor.authorWhitty, B.R.
dc.contributor.authorVaillancourt, B.
dc.contributor.authorLin, H.
dc.contributor.authorMassa, A.N.
dc.contributor.authorGeoffroy, M.
dc.contributor.authorLundback, S.
dc.contributor.authorDellaPenna, D.
dc.contributor.authorBuell, R.
dc.contributor.authorSharma, S.K.
dc.contributor.authorMarshall, D.F.
dc.contributor.authorWaugh, R.
dc.contributor.authorBryan, Glenn J.
dc.contributor.authorDestefanis, M.
dc.contributor.authorNagy, I.
dc.contributor.authorMilbourne, D.
dc.contributor.authorThomson, S.J.
dc.contributor.authorFiers, M.
dc.contributor.authorJacobs, J.M.E.
dc.contributor.authorNielsen, K.L.
dc.contributor.authorSonderkaer, M.
dc.contributor.authorIovene, M.
dc.contributor.authorTorres, G.A.
dc.contributor.authorJiang, J.
dc.contributor.authorVeilleux, R.E.
dc.contributor.authorBachem, C.W.B.
dc.contributor.authorBoer, J. de.
dc.contributor.authorBorm, T.
dc.contributor.authorKloosterman, B.
dc.contributor.authorEck, H. van.
dc.contributor.authorDatema, E.
dc.contributor.authorLintel Hekkert, B. te.
dc.contributor.authorGoverse, A.
dc.contributor.authorHam, R.C.H.J. van.
dc.contributor.authorVisser, Richard G.F.
dc.date.accessioned2015-07-30T06:21:05Zen
dc.date.available2015-07-30T06:21:05Zen
dc.identifier.urihttps://hdl.handle.net/10568/67692
dc.titleGenome sequence and analysis of the tuber crop potatoen
dcterms.abstractPotato (Solanum tuberosum L.) is the world’s most important non-grain food crop and is central to global food security. It is clonally propagated, highly heterozygous, autotetraploid, and suffers acute inbreeding depression. Here we use a homozygous doubled-monoploid potato clone to sequence and assemble 86% of the 844-megabase genome. We predict 39,031 protein-coding genes and present evidence for at least two genome duplication events indicative of a palaeopolyploid origin. As the first genome sequence of an asterid, the potato genome reveals 2,642 genes specific to this large angiosperm clade. We also sequenced a heterozygous diploid clone and show that gene presence/absence variants and other potentially deleterious mutations occur frequently and are a likely cause of inbreeding depression. Gene family expansion, tissue-specific expression and recruitment of genes to new pathways contributed to the evolution of tuber development. The potato genome sequence provides a platform for genetic improvement of this vital crop. The genome of the potato (Solanum tuberosum L.), a staple crop vital to food security, has been sequenced. The Potato Genome Sequencing Consortium sequenced a homozygous doubled-monoploid potato clone as well as a heterozygous diploid clone. Genome analysis reveals traces of at least two genome duplication events and genes specific to Asterids, a large clade of flowering plants of which the potato is the first to be sequenced. Gene presence/absence variants and other potentially deleterious mutations are frequent and may be the cause of inbreeding depression. The genome sequence will facilitate genetic improvements in the potato with a view to improving yield and to increasing disease and stress resistance of this crop, which is a now a significant component of worldwide food production and is becoming increasingly important in the developing world.en
dcterms.accessRightsOpen Access
dcterms.available2011-07-10
dcterms.bibliographicCitationXu, X.; Pan, P.; Cheng, S.; Zhang, B.; Mu, D.; Ni, P.; Zhang, G.; Yang, S.; Li, R.; Wang, J.; Orjeda, G.; Guzman, F.; Torres, M.; Lozano, R.; Ponce, O.; Martinez, D.; Cruz, G. de la.; Chakrabarti, S.K.; Patil, V.U.; Skryabin, K.G.; Kuznetsov, B.B.; Ravin, N.V.; Kolganova, T.V.; Beletsky, A.V.; Mardanov, A.V.; Genova, A.D.; Bolser, D.M.; Martin, D.M.A.; Li, G.; Yang, Y.; Kuang, H.; Hu, Q.; Xiong, X.; Bishop, G.J.; Sagredo, B.; Mejia, N.; Zagorski, W.; Gromadka, R.; Gawor, J.; Szczesny, P.; Huang, S.; Zhang, Z.; Liang, C.; He, J.; Li, Y.; He, Y.; Xu, J.; Zhang, Y.; Xie, B.; Du, Y.; Qu, D.; Bonierbale, M.; Ghislain, M.; Herrera, M.R.; Giuliano, G.; Pietrella, M.; Perrotta, G.; Facella, P.; OﾒBrien, K; Feingold, S.E.; Barreiro, L.E.; Massa, G.A.; Diambra, L.; Whitty, B.R.; Vaillancourt, B.; Lin, H.; Massa, A.N.; Geoffroy, M.; Lundback, S.; DellaPenna, D.; Buell, R.; Sharma, S.K.; Marshall, D.F.; Waugh, R.; Bryan, G.J.; Destefanis, M.; Nagy, I.; Milbourne, D.; Thomson, S.J.; Fiers, M.; Jacobs, J.M.E.; Nielsen, K.L.; Sonderkaer, M.; Iovene, M.; Torres, G.A.; Jiang, J.; Veilleux, R.E.; Bachem, C.W.B.; Boer, J. de.; Borm, T.; Kloosterman, B.; Eck, H. van.; Datema, E.; Lintel Hekkert, B. te.; Goverse, A.; Ham, R.C.H.J. van.; Visser, R.G.F. 2011. Genome sequence and analysis of the tuber crop potato. Nature. (USA). ISSN 0028-0836. 475(7355):189-195.en
dcterms.extentp. 189-195
dcterms.issued2011-07
dcterms.languageen
dcterms.licenseCC-BY-NC-SA-3.0
dcterms.publisherSpringer
dcterms.subjectpotatoesen
dcterms.subjectgene mappingen
dcterms.subjectgenomicsen
dcterms.subjectheterozygotesen
dcterms.subjectinbreedingen
dcterms.subjectdisease resistanceen
dcterms.subjectplant breedingen
dcterms.subjectplant geneticsen
dcterms.typeJournal Article

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