AquaPath: a web-based user interface for rapid identification of aquaculture pathogens based on long-read DNA sequence data

Citation

CGIAR Platform for Big Data in Agriculture. 2021. AquaPath: a web-based user interface for rapid identification of aquaculture pathogens based on long-read DNA sequence data. Reported in Platform for Big Data in Agriculture Annual Report 2021. Innovations.

Abstract/Description

Currently AquaPath features three identification tools that cover (1) major sequence type of piscine Group B Streptococcus (GBS), (2) most serotype of GBS and (3) major biotype of Yersinia ruckeri. AquaPath is still under development and more tools will be developed to cover additional bacterial species. https://worldfishcenter.github.io/rappseq/identify/

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en

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