Genome-wide association analysis reveals new insights into the genetic architecture of defensive, agro-morphological and quality-related traits in cassava
| cg.authorship.types | CGIAR and developing country institute | |
| cg.contributor.affiliation | International Institute of Tropical Agriculture | |
| cg.contributor.affiliation | Boyce Thompson Institute for Plant Research | |
| cg.contributor.affiliation | National Root Crops Research Institute, Nigeria | |
| cg.contributor.affiliation | Cornell University | |
| cg.contributor.affiliation | United States Department of Agriculture | |
| cg.contributor.crp | Roots, Tubers and Bananas | |
| cg.contributor.donor | Bill & Melinda Gates Foundation | |
| cg.contributor.donor | Department for International Development, United Kingdom | |
| cg.coverage.country | Nigeria | |
| cg.coverage.iso3166-alpha2 | NG | |
| cg.coverage.region | Africa | |
| cg.coverage.region | Western Africa | |
| cg.creator.identifier | Ismail Rabbi: 0000-0001-9966-2941 | |
| cg.creator.identifier | Kayondo Siraj Ismail: 0000-0002-3212-5727 | |
| cg.creator.identifier | Prasad Peteti: 0000-0002-6013-8947 | |
| cg.creator.identifier | E J Parkes: 0000-0003-4063-1483 | |
| cg.creator.identifier | Jean-Luc Jannink: 0000-0003-4849-628X | |
| cg.creator.identifier | Chiedozie Egesi: 0000-0002-9063-2727 | |
| cg.creator.identifier | Peter Kulakow: 0000-0002-7574-2645 | |
| cg.howPublished | Formally Published | |
| cg.identifier.doi | https://doi.org/10.1007/s11103-020-01038-3 | |
| cg.identifier.iitatheme | BIOMETRICS | |
| cg.identifier.iitatheme | BIOTECH & PLANT BREEDING | |
| cg.identifier.iitatheme | PLANT PRODUCTION & HEALTH | |
| cg.isijournal | ISI Journal | |
| cg.issn | 0167-4412 | |
| cg.issue | 3 | |
| cg.journal | Plant Molecular Biology | |
| cg.reviewStatus | Peer Review | |
| cg.subject.actionArea | Genetic Innovation | |
| cg.subject.iita | AGRONOMY | |
| cg.subject.iita | BIOMETRICS | |
| cg.subject.iita | CASSAVA | |
| cg.subject.iita | GENETIC IMPROVEMENT | |
| cg.subject.iita | PLANT BREEDING | |
| cg.subject.iita | PLANT GENETIC RESOURCES | |
| cg.subject.iita | PLANT HEALTH | |
| cg.subject.iita | PLANT PRODUCTION | |
| cg.volume | 109 | |
| dc.contributor.author | Rabbi, Ismail Y. | |
| dc.contributor.author | Kayondo, S.I. | |
| dc.contributor.author | Bauchet, Guillaume J. | |
| dc.contributor.author | Yusuf, M. | |
| dc.contributor.author | Aghogho, C.I. | |
| dc.contributor.author | Ogunpaimo, K. | |
| dc.contributor.author | Uwugiaren, R. | |
| dc.contributor.author | Smith, I.A. | |
| dc.contributor.author | Peteti, P. | |
| dc.contributor.author | Agbona, A. | |
| dc.contributor.author | Parkes, Elizabeth Y. | |
| dc.contributor.author | Ezenwaka, L. | |
| dc.contributor.author | Wolfe, M. | |
| dc.contributor.author | Jannink, Jean-Luc | |
| dc.contributor.author | Egesi, Chiedozie N. | |
| dc.contributor.author | Kulakow, Peter A. | |
| dc.date.accessioned | 2021-01-25T14:54:57Z | en |
| dc.date.available | 2021-01-25T14:54:57Z | en |
| dc.identifier.uri | https://hdl.handle.net/10568/110973 | |
| dc.title | Genome-wide association analysis reveals new insights into the genetic architecture of defensive, agro-morphological and quality-related traits in cassava | en |
| dcterms.abstract | Cassava (Manihot esculenta) is one of the most important starchy root crops in the tropics due to its adaptation to marginal environments. Genetic progress in this clonally propagated crop can be accelerated through the discovery of markers and candidate genes that could be used in cassava breeding programs. We carried out a genome-wide association study (GWAS) using a panel of 5,310 clones developed at the International Institute of Tropical Agriculture - Nigeria. The population was genotyped at more than 100,000 SNP markers via genotyping-by-sequencing (GBS). Genomic regions underlying genetic variation for 14 traits classified broadly into four categories: biotic stress (cassava mosaic disease and cassava green mite severity); quality (dry matter content and carotenoid content) and plant agronomy (harvest index and plant type). We also included several agro-morphological traits related to leaves, stems and roots with high heritability. In total, 41 significant associations were uncovered. While some of the identified loci matched with those previously reported, we present additional association signals for the traits. We provide a catalogue of favourable alleles at the most significant SNP for each trait-locus combination and candidate genes occurring within the GWAS hits. These resources provide a foundation for the development of markers that could be used in cassava breeding programs and candidate genes for functional validation. | en |
| dcterms.accessRights | Open Access | |
| dcterms.audience | Scientists | |
| dcterms.available | 2020-07-30 | |
| dcterms.bibliographicCitation | Rabbi, I.Y., Kayondo, S.I., Bauchet, G., Muyideen, Y., Aghogho, C.I., Ogunpaimo, K., ... & Kulakow, P. (2020). Genome-wide association analysis reveals new insights into the genetic architecture of defensive, agro-morphological and quality-related traits in cassava. Plant Molecular Biology, 1-19. | en |
| dcterms.extent | p. 195-213 | |
| dcterms.issued | 2022-06 | |
| dcterms.language | en | |
| dcterms.license | CC-BY-4.0 | |
| dcterms.publisher | Springer | |
| dcterms.subject | cassava | en |
| dcterms.subject | breeding | en |
| dcterms.subject | genomes | en |
| dcterms.subject | pest resistance | en |
| dcterms.subject | disease resistance | en |
| dcterms.subject | morphology | en |
| dcterms.subject | genotypes | en |
| dcterms.type | Journal Article |